Function reference • SpaTopic

All functions

Seurat5obj_to_SpaTopic(): Convert a Seurat v5 object as the input of 'SpaTopic'

SpaTopic SpaTopic-package SpaTopic-Package: SpaTopic: Spatial Topic Modeling for Multiplexed Images

SpaTopic-class: A class of the output from 'SpaTopic'

SpaTopic_inference(): 'SpaTopic': fast topic inference to identify tissue architecture in multiplexed images

lung5: Example input data for 'SpaTopic'

print(<SpaTopic>): Print method for SpaTopic objects

spatopic_message(): Format messages for SpaTopic package

stratified_sampling_sf(): Spatially stratified random sample points from an image.